MirGeneDB ID | Cmi-Mir-146-P4 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-146-P1
Cmi-Mir-146-P2
|
Orthologues |
Ami-Mir-146-P4
Bta-Mir-146-P4-v1
Bta-Mir-146-P4-v2
Cfa-Mir-146-P4
Cja-Mir-146-P4
Cli-Mir-146-P4
Cpi-Mir-146-P4
Cpo-Mir-146-P4
Dno-Mir-146-P4
Dre-Mir-146-P4-v1
Dre-Mir-146-P4-v2
Ebu-Mir-146
Eca-Mir-146-P4-v1
Eca-Mir-146-P4-v2
Gga-Mir-146-P4
Hsa-Mir-146-P4
Laf-Mir-146-P4
Lch-Mir-146-P4
Loc-Mir-146-P4
Mdo-Mir-146-P4
Mml-Mir-146-P4
Mmr-Mir-146-P4
Mmu-Mir-146-P4
Mun-Mir-146-P4
Neu-Mir-146-P4
Oan-Mir-146-P4
Ocu-Mir-146-P4
Pab-Mir-146-P4
Pma-Mir-146
Rno-Mir-146-P4
Sha-Mir-146-P4
Spt-Mir-146-P4
Sto-Mir-146-P4
Tgu-Mir-146-P4
Xla-Mir-146-P4
Xtr-Mir-146-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635873.1: 1678390-1678453 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCUUACAGUUGGAUGAUGCCCCCGGCUGUGAGAACUGAAUUCCAUGGGUUGUCCCAGAUACCUUUUCUCAACCCAUGAUUCUCAGUUCUGCAGCUUGGAAGCUUUUUCAUCUCCAAACACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUCUUACAGUUGGAUGAU- C-| C G AUUC UCCCAGAU
GC CC GGCUGU AGAACUGA CAUGGGUUG \
CG GG UCGACG UCUUGACU GUACCCAAC A
GACACAAACCUCUACUUUUU AA^ U - CUUA UCUUUUCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cmi-Mir-146-P4_5p |
mirBase accession | None |
Sequence |
0- UGAGAACUGAAUUCCAUGGGUUG -23
Get sequence
|
Star sequence |
Cmi-Mir-146-P4_3p* |
mirBase accession | None |
Sequence |
42- ACCCAUGAUUCUCAGUUCUGCA -64
Get sequence
|