Mir-146-P4

MirGeneDB ID

Sha-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-146-P1

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL834610.1: 730365-730421 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGAAUUUAGAGAACCUGUAUCUUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUUUUUGUAUCACACCUAUGAAACUCAGUUCUUCAGCUGGGAUAUCUCUGCCAUCACAGACAAAG

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Structure

        10           20        30        40        50         
CAGAAUUUAGAGAACCU---|     U     UU         A  C       -  UUUU 
                    GUAUCU CAGCU  GAGAACUGA UU CAUGGGU UG    \
                    UAUAGG GUCGA  UUCUUGACU AA GUAUCCA AC    U
GAAACAGACACUACCGUCUC^     -     C-         C  A       C  UAUG 
     110       100         90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-146-P4_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUGGGUUG -23

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Star sequence

Sha-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

35- ACCUAUGAAACUCAGUUCUUCA -57

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