Mir-146-P4

MirGeneDB ID

Gga-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-146a

Paralogues

Gga-Mir-146-P1 Gga-Mir-146-P2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Hsa-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

13: 8517296-8517359 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGAAACGAAUGUCGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUCCUUUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUUUCUGUCUUCACAUACACGG

Get precursor sequence

Structure

        10           20        30        40        50        60  
CUUGAAACGAAUGUCGU---|     UC    UU         A           GUAAUUGAA 
                    GUAUCC  AGCU  GAGAACUGA UUCCAUGGGUU         \
                    UAUAGG  UCGA  UUCUUGACU GGGGUACCCAG         U
GGCACAUACACUUCUGUCUU^     U-    C-         C           ACUGUUUCC 
  120       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-146-P4_5p

mirBase accession

MIMAT0001163

Sequence

0- UGAGAACUGAAUUCCAUGGGUUG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-146a-5p
miRDB: MIMAT0001163

Star sequence

Gga-Mir-146-P4_3p*

mirBase accession

MIMAT0026529

Sequence

42- ACCCAUGGGGCUCAGUUCUUCA -64

Get sequence

Proposed targets

TargetScanVert: gga-miR-146a-3p
miRDB: MIMAT0026529