Mir-146-P4

MirGeneDB ID

Xtr-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-146a

Paralogues

Xtr-Mir-146-P2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr3: 14163632-14163687 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAACAAUGAUAACAAUGAGUUCUUAGCUUUGAGAACUGAAUUCCAUAGGUUGUUAGAGGUUAGACCUAUGGUGCUUAGUUCCAUAGCUUGGAUCCCACUGGCCUCGAAAUACCAA

Get precursor sequence

Structure

        10        20          30        40        50        
UGAACAAUGAUAACAAUGAGU--|  U    U  A       AUU         GUUAG 
                       UCU AGCU UG GAACUGA   CCAUAGGUU     \
                       AGG UCGA AC CUUGAUU   GGUAUCCAG     A
AACCAUAAAGCUCCGGUCACCCU^  U    U  -       CGU         AUUGG 
    110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-146-P4_5p

mirBase accession

MIMAT0003604

Sequence

0- UGAGAACUGAAUUCCAUAGGUUG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-146a

Star sequence

Xtr-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

34- ACCUAUGGUGCUUAGUUCCAUA -56

Get sequence