Mir-146-P4

MirGeneDB ID

Ami-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-146a

Paralogues

Ami-Mir-146-P1 Ami-Mir-146-P2

Orthologues

Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713851.1: 11963153-11963215 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CUUAAAAUGAAUAUCAUGUAUUCUUGGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUCUUGAACAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUCUCUGUCUUCACGUACACUG

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Structure

        10           20        30        40        50        60 
CUUAAAAUGAAUAUCAU---|     UU    UU         A           GUAAUUGA 
                    GUAUUC  GGCU  GAGAACUGA UUCCAUGGGUU        A
                    UAUAGG  UCGA  UUCUUGACU GGGGUACCCAG        U
GUCACAUGCACUUCUGUCUC^     U-    C-         C           ACAAGUUC 
 120       110       100          90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-146-P4_5p

mirBase accession

MIMAT0038171

Sequence

0- UGAGAACUGAAUUCCAUGGGUU -22

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Star sequence

Ami-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

42- CCCAUGGGGCUCAGUUCUUCA -63

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