MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-146a
Paralogues Cpo-Mir-146-P1 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Eca-Mir-146-P4-v1  Eca-Mir-146-P4-v2  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_17: 7375710-7375766 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCUGGAGACCCUGUGCGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAAUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGAUAGAC
Get precursor sequence
Structure
        10           20        30        40        50        
CUCUGGAGACCCUGUGC---|     U     UU            C        GUGUC 
                    GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                    UAUAGG GUCGA  UUCUUGACUUAA GUGUCCAG     G
CAGAUAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
     110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-146-P4_5p

mirBase accessionMIMAT0047016
Sequence
0- UGAGAACUGAAUUCCAUGGGUUG -23
Get sequence
Star sequence

Cpo-Mir-146-P4_3p* (predicted)

mirBase accessionMIMAT0047017
Sequence
35- ACCUGUGAAAUUCAGUUCUUCA -57
Get sequence