Mir-146-P4

MirGeneDB ID

Mmu-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-146a

Paralogues

Mmu-Mir-146-P1

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr11: 43374399-43374456 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCUGGAGAGUCUGUGUGUAUCCCCAGCUCUGAGAACUGAAUUCCAUGGGUUAUAUCAAUGUCAGACCUGUGAAAUUCAGUUCUUCAGCUGGGAUAGCUCUGUCAUCACGGACCUGAA

Get precursor sequence

Structure

        10            20        30        40        50        
AUCUGGAGAGUCUGUGUG----|     C    CU            C        AUAUC 
                      UAUCCC AGCU  GAGAACUGAAUU CAUGGGUU     A
                      AUAGGG UCGA  UUCUUGACUUAA GUGUCCAG     A
AAGUCCAGGCACUACUGUCUCG^     -    C-            A        ACUGU 
      110       100         90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-146-P4_5p

mirBase accession

MIMAT0000158

Sequence

0- UGAGAACUGAAUUCCAUGGGUUA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000158
TargetScanVert: mmu-miR-146a-5p
miRDB: MIMAT0000158

Star sequence

Mmu-Mir-146-P4_3p*

mirBase accession

MIMAT0016989

Sequence

35- ACCUGUGAAAUUCAGUUCUUCAG -58

Get sequence

Proposed targets

TargetScanVert: mmu-miR-146a-3p
miRDB: MIMAT0016989