MirGeneDB ID | Xla-Mir-146-P4 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-146a
|
Paralogues |
Xla-Mir-146-P2a
Xla-Mir-146-P2b
|
Orthologues |
Ami-Mir-146-P4
Bta-Mir-146-P4-v1
Bta-Mir-146-P4-v2
Cfa-Mir-146-P4
Cja-Mir-146-P4
Cli-Mir-146-P4
Cmi-Mir-146-P4
Cpi-Mir-146-P4
Cpo-Mir-146-P4
Dno-Mir-146-P4
Dre-Mir-146-P4-v1
Dre-Mir-146-P4-v2
Ebu-Mir-146
Eca-Mir-146-P4-v1
Eca-Mir-146-P4-v2
Gga-Mir-146-P4
Hsa-Mir-146-P4
Laf-Mir-146-P4
Lch-Mir-146-P4
Loc-Mir-146-P4
Mdo-Mir-146-P4
Mml-Mir-146-P4
Mmr-Mir-146-P4
Mmu-Mir-146-P4
Mun-Mir-146-P4
Neu-Mir-146-P4
Oan-Mir-146-P4
Ocu-Mir-146-P4
Pab-Mir-146-P4
Pma-Mir-146
Rno-Mir-146-P4
Sha-Mir-146-P4
Spt-Mir-146-P4
Sto-Mir-146-P4
Tgu-Mir-146-P4
Xtr-Mir-146-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030728.1: 19665733-19665788 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAUAGCGAUAACAAUGAGUUCUUAGCUUUGAGAACUGAAUUCCAUAGGUUGUUAGGGGUUAGACCUAUGGUGCUUAGUUCCAUAGCUUGGAUCCCACCUGCCUCGGAACAAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAUAGCGAUAACAAUGAGU--| U U A AUU GUUAG
UCU AGCU UG GAACUGA CCAUAGGUU \
AGG UCGA AC CUUGAUU GGUAUCCAG G
AAGAACAAGGCUCCGUCCACCCU^ U U - CGU AUUGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-146-P4_5p |
mirBase accession | MIMAT0046462 |
Sequence |
0- UGAGAACUGAAUUCCAUAGGUUG -23
Get sequence
|
Star sequence |
Xla-Mir-146-P4_3p* |
mirBase accession | MIMAT0046463 |
Sequence |
34- ACCUAUGGUGCUUAGUUCCAUA -56
Get sequence
|