MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-146a
Paralogues Rno-Mir-146-P1 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Gga-Mir-146-P4  Hsa-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pma-Mir-146  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr10: 28962498-28962554 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUGGAGAGUCUGUGUGUAUCCUCAGCUCUGAGAACUGAAUUCCAUGGGUUAUAGCAAUGUCAGACCUGUGAAGUUCAGUUCUUUAGCUGGGAUAGCUCUAUCGUCAUGGACCUGA
Get precursor sequence
Structure
        10           20        30        40        50        
ACCUGGAGAGUCUGUGUG---|    U     CU            C        AUAGC 
                     UAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     AUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     A
AGUCCAGGUACUGCUAUCUCG^    -     U-            A        ACUGU 
     110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-146-P4_5p

mirBase accessionMIMAT0000852
Sequence
0- UGAGAACUGAAUUCCAUGGGUUA -23
Get sequence
Proposed targets microrna.org: MIMAT0000852
TargetScanVert: rno-miR-146a-5p
miRDB: MIMAT0000852
Star sequence

Rno-Mir-146-P4_3p*

mirBase accessionMIMAT0017132
Sequence
35- ACCUGUGAAGUUCAGUUCUUUA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-146a-3p
miRDB: MIMAT0017132