Mir-146-P4

MirGeneDB ID

Rno-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-146a

Paralogues

Rno-Mir-146-P1

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 28962498-28962554 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCUGGAGAGUCUGUGUGUAUCCUCAGCUCUGAGAACUGAAUUCCAUGGGUUAUAGCAAUGUCAGACCUGUGAAGUUCAGUUCUUUAGCUGGGAUAGCUCUAUCGUCAUGGACCUGA

Get precursor sequence

Structure

        10           20        30        40        50        
ACCUGGAGAGUCUGUGUG---|    U     CU            C        AUAGC 
                     UAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     AUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     A
AGUCCAGGUACUGCUAUCUCG^    -     U-            A        ACUGU 
     110       100         90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-146-P4_5p

mirBase accession

MIMAT0000852

Sequence

0- UGAGAACUGAAUUCCAUGGGUUA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000852
TargetScanVert: rno-miR-146a-5p
miRDB: MIMAT0000852

Star sequence

Rno-Mir-146-P4_3p*

mirBase accession

MIMAT0017132

Sequence

35- ACCUGUGAAGUUCAGUUCUUUA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-146a-3p
miRDB: MIMAT0017132