Mir-146-P1

MirGeneDB ID

Rno-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-146b

Paralogues

Rno-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 266089502-266089561 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGCUGAGAGAACUUUGGCCACCUGGCCCUGAGAACUGAAUUCCAUAGGCUGUGAACUCUAGCAGAUGCCCUAGGGACUCAGUUCUGGUGCCUGGCUGUGCUACACCAUCGAUACCAAC

Get precursor sequence

Structure

        10             20         30        40        50          
CAGGCUGAGAGAACUUU-----|    CCU   -  UG        A    AUA   UGUGAACU 
                      GGCCA   GGC CC  AGAACUGA UUCC   GGC        \
                      UCGGU   CCG GG  UCUUGACU AGGG   CCG        C
CAACCAUAGCUACCACAUCGUG^    ---   U  --        C    AUC   UAGACGAU 
.       110       100           90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-146-P1_5p

mirBase accession

MIMAT0005595

Sequence

0- UGAGAACUGAAUUCCAUAGGCUGU -24

Get sequence

Proposed targets

microrna.org: MIMAT0005595
TargetScanVert: rno-miR-146b-5p
miRDB: MIMAT0005595

Star sequence

Rno-Mir-146-P1_3p*

mirBase accession

MIMAT0017334

Sequence

38- GCCCUAGGGACUCAGUUCUGGU -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-146b-3p
miRDB: MIMAT0017334