MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-146-P1 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Eca-Mir-146-P4-v1  Eca-Mir-146-P4-v2  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG6: 20901651-20901709 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCCGGGACCGCUGCGGAAUUCUCGGCUUUGAGAACUGAAUUCCAAGGGUUGAGGUUUACCGACCAGCCCAUGGACCUCAGUUCUGGAGCUUGGGGUUUCUAAACGACACCGCUGGGA
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Structure
        10          20        30        40        50         
GCGCCGGGACCGCUGCG--|      C      G        AU    A      AGGUU 
                   GAAUUCU GGCUUU AGAACUGA  UCCA GGGUUG     U
                   UUUGGGG UCGAGG UCUUGACU  AGGU CCCGAC     A
AGGGUCGCCACAGCAAAUC^      U      -        CC    A      CAGCC 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-146-P4_5p
mirBase accessionNone
Sequence 
0- UGAGAACUGAAUUCCAAGGGUUG -23
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Star sequence

Loc-Mir-146-P4_3p*
mirBase accessionNone
Sequence 
37- GCCCAUGGACCUCAGUUCUGGA -59
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