Mir-146-P4-v1

MirGeneDB ID

Bta-Mir-146-P4-v1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-146a

Paralogues

Bta-Mir-146-P1 Bta-Mir-146-P4-v2

Orthologues

Ami-Mir-146-P4 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037334.1: 72071568-72071625 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-146-P4-v1)

Mir-146-P4-v2 NC_037334.1: 72071567-72071625 [+] UCSC Ensembl
Mir-146-P4-v1 NC_037334.1: 72071568-72071625 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUGGAAAGCCCAUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUAGGUUGUGUCAGUGUCAGACCUGUGAAGUUUAGUUCUUUAGCUGGGAUAUCUCUAUCAUCCUAGAUUCGAG

Get precursor sequence

Structure

        10            20        30        40        50        
CUCUGGAAAGCCCAUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUAGGUU     A
                     UAUAGG GUCGA  UUCUUGAUUUGA GUGUCCAG     G
GAGCUUAGAUCCUACUAUCUC^     -     U-            A        ACUGU 
      110       100         90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-146-P4-v1_5p

mirBase accession

MIMAT0009236

Sequence

0- UGAGAACUGAAUUCCAUAGGUU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-146a

Star sequence

Bta-Mir-146-P4-v1_3p*

mirBase accession

None

Sequence

36- CCUGUGAAGUUUAGUUCUUUAG -58

Get sequence