Mir-146-P4

MirGeneDB ID

Sto-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-146-P2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01000071.1: 1362635-1362698 [+]

Precursor
(pre-Mir +30nt flank)

CUUCAGACUGAUGCAAGUUGCCCCCAGCUGUGAGAACUGAAUUCCAUGAGUUGUUCGAGCUACUGUUUCUCAGCCCAUGGUUCUCAGUUCUGCAGCUUGGAAGCAUUUUAUGUCUAAUGGGUGA

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Structure

        10         20         30        40        50        60  
CUUCAGACUGAUGCAAGU-   CC  -|     G        AUU     A    UUCGAGCU 
                   UGC  CC AGCUGU AGAACUGA   CCAUG GUUG        \
                   ACG  GG UCGACG UCUUGACU   GGUAC CGAC        A
AGUGGGUAAUCUGUAUUUU   AA  U^     -        CUU     C    UCUUUGUC 
  120       110       100         90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-146-P4_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUGAGUUG -23

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Star sequence

Sto-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

42- GCCCAUGGUUCUCAGUUCUGCA -64

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