| MirGeneDB ID | Cmi-Mir-146-P2 |
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| Family name |
MIR-146 (all species) |
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| Seed |
GAGAACU |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
|
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| Paralogues |
Cmi-Mir-146-P1
Cmi-Mir-146-P4
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| Orthologues |
Aca-Mir-146-P2
Ami-Mir-146-P2
Cli-Mir-146-P2
Cpi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Mun-Mir-146-P2-v1
Mun-Mir-146-P2-v2
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Tgu-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635913.1: 2268945-2269010 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAAGACGAUGGACUGUGGCAGCUCCAGCUGUGAGAACUGAAUUCCAUGGGCUGGUCACGCAGUUUUCUUCCUCAGUCCAUAGUAGUCAGUUCUUCCGUUUGGCUGCUUGAUUCUCCAGCAACUUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAAGACGAUGGACUGUG---| CC U UG AUUCC GGUCACGCAG
GCAGCU AGC G AGAACUGA AUGGGCU \
CGUCGG UUG C UCUUGACU UACCUGA U
UGUUCAACGACCUCUUAGUU^ U- - CU GAUGA CUCCUUCUUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Mir-146-P2_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGAACUGAAUUCCAUGGGCU -22
Get sequence
|
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| Star sequence |
Cmi-Mir-146-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- UCCAUAGUAGUCAGUUCUUCC -66
Get sequence
|
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