| MirGeneDB ID | Cmi-Mir-146-P2 |
|---|
| Family name |
MIR-146 (all species) |
|---|
| Seed |
GAGAACU |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Cmi-Mir-146-P1
Cmi-Mir-146-P4
|
|---|
| Orthologues |
Aca-Mir-146-P2
Ami-Mir-146-P2
Cli-Mir-146-P2
Cpi-Mir-146-P2
Ebu-Mir-146
Gga-Mir-146-P2
Gja-Mir-146-P2
Lch-Mir-146-P2
Mun-Mir-146-P2-v1
Mun-Mir-146-P2-v2
Pbv-Mir-146-P2
Pma-Mir-146
Spt-Mir-146-P2
Sto-Mir-146-P2
Tgu-Mir-146-P2
Xla-Mir-146-P2a
Xla-Mir-146-P2b
Xtr-Mir-146-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635913.1: 2268945-2269010 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGACGAUGGACUGUGGCAGCUCCAGCUGUGAGAACUGAAUUCCAUGGGCUGGUCACGCAGUUUUCUUCCUCAGUCCAUAGUAGUCAGUUCUUCCGUUUGGCUGCUUGAUUCUCCAGCAACUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAGACGAUGGACUGUG---| CC U UG AUUCC GGUCACGCAG
GCAGCU AGC G AGAACUGA AUGGGCU \
CGUCGG UUG C UCUUGACU UACCUGA U
UGUUCAACGACCUCUUAGUU^ U- - CU GAUGA CUCCUUCUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cmi-Mir-146-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGAACUGAAUUCCAUGGGCU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Mir-146-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- UCCAUAGUAGUCAGUUCUUCC -66
Get sequence
|
|---|
