MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-11624-P1a

Family name MIR-11624 (all species)
Seed GAUAUGC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11624a-1
Paralogues Tca-Mir-11624-P1b  Tca-Mir-11624-P2  Tca-Mir-11624-P3  Tca-Mir-11624-P4  Tca-Mir-11624-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG5: 505653-505713 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11624-P1a)
Mir-11624-P2 LG5: 505254-505313 [+] Ensembl
Mir-11624-P1a LG5: 505653-505713 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUUUAAAUUAUAAUAGAUUGGUGUAAAAUUGAGACUUUAACAUUUUCAUGCAAUUUAUAUCAACAUGAUAUGCUAGAGUGUCGGUUCUACAACUAUCACAAAUCAAUCUUCGAACUAA
Get precursor sequence
Structure
        10           20        30        40        50          
UAGUUUUAAAUUAUAAUA---|  UGG    A      G      A   UU     CAAUUU 
                     GAU   UGUA AAUUGA ACUUUA CAU  UCAUG      \
                     CUA   ACAU UUGGCU UGAGAU GUA  AGUAC      A
AAUCAAGCUUCUAACUAAACA^  UCA    C      G      C   U-     AACUAU 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11624-P1a_5p*

mirBase accessionMIMAT0045523
Sequence
0- AUUGAGACUUUAACAUUUUCAUG -23
Get sequence
Mature sequence

Tca-Mir-11624-P1a_3p

mirBase accessionMIMAT0045524
Sequence
38- UGAUAUGCUAGAGUGUCGGUUCU -61
Get sequence