MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-11624-P4

Family name MIR-11624 (all species)
Seed GAUAUGC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11624c
Paralogues Tca-Mir-11624-P1a  Tca-Mir-11624-P1b  Tca-Mir-11624-P2  Tca-Mir-11624-P3  Tca-Mir-11624-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG6: 9853278-9853338 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11624-P4)
Mir-11624-P3 LG6: 9847531-9847590 [-] Ensembl
Mir-11624-P4 LG6: 9853278-9853338 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUUUAAAUACUAAUAGAUUGGUGUAAAAUUGAGACUUUAGUAUUUUCAUGCAAUUUAUGUCAACAUGAUAUGCUAAAGUGUCGGUUCUACAACAAUCACAAAUCAAUCUUCGAACUAG
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Structure
        10           20        30        40        50          
CAGUUUUAAAUACUAAUA---|    G    A      G          UU     CAAUUU 
                     GAUUG UGUA AAUUGA ACUUUAGUAU  UCAUG      \
                     CUAAC ACAU UUGGCU UGAAAUCGUA  AGUAC      A
GAUCAAGCUUCUAACUAAACA^    A    C      G          U-     AACUGU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11624-P4_5p*

mirBase accessionMIMAT0045544
Sequence
0- AUUGAGACUUUAGUAUUUUCAUG -23
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Mature sequence

Tca-Mir-11624-P4_3p

mirBase accessionMIMAT0045545
Sequence
38- UGAUAUGCUAAAGUGUCGGUUCU -61
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