MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-11624-P5

Family name MIR-11624 (all species)
Seed UUGGGAC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11624d
Paralogues Tca-Mir-11624-P1a  Tca-Mir-11624-P1b  Tca-Mir-11624-P2  Tca-Mir-11624-P3  Tca-Mir-11624-P4 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG6: 9958318-9958377 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-11624-P5)
Mir-3851-P1 LG6: 9956963-9957020 [-] Ensembl
Mir-11624-P5 LG6: 9958318-9958377 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUGUAAAUUCUAAUAGAUUGGUGUAAAAUUGGGACUUUAGCAUUUUCAUGCAAUUUAUAUCAUCAUGAUGUGCUAAUGUGUCGGUUUUACAACAAUCACAAAUCAAUCUUCGAACUA
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Structure
        10          20        30        40        50          
CAGUUGUAAAUUCUAAUA--|    G           G  U       UU     CAAUUU 
                    GAUUG UGUAAAAUUGG AC UUAGCAU  UCAUG      \
                    CUAAC ACAUUUUGGCU UG AAUCGUG  AGUAC      A
AUCAAGCUUCUAACUAAACA^    A           G  U       U-     UACUAU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11624-P5_5p

mirBase accessionMIMAT0045532
Sequence
0- AUUGGGACUUUAGCAUUUUCAUG -23
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Star sequence

Tca-Mir-11624-P5_3p*

mirBase accessionMIMAT0045533
Sequence
38- UGAUGUGCUAAUGUGUCGGUUU -60
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