MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-11624-P3

Family name MIR-11624 (all species)
Seed UUGAGAC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11624b-1
Paralogues Tca-Mir-11624-P1a  Tca-Mir-11624-P1b  Tca-Mir-11624-P2  Tca-Mir-11624-P4  Tca-Mir-11624-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG6: 9847531-9847590 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-11624-P3)		 Mir-11624-P3 LG6: 9847531-9847590 [-] Ensembl
Mir-11624-P4 LG6: 9853278-9853338 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUUUAAAUACUAAUAGAUUGGAGUAAAAUUGAGACUUUAGCAUUUUCAUGCAAUUUAUAUCAACAUGAUGUGCUAAAGUGUCGGUUUUACAACAAUCACAAAUCAAUCUUCAAACAA
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Structure
        10          20        30        40        50          
CAGUUUUAAAUACUAAUA--|    GA          G          UU     CAAUUU 
                    GAUUG  GUAAAAUUGA ACUUUAGCAU  UCAUG      \
                    CUAAC  CAUUUUGGCU UGAAAUCGUG  AGUAC      A
AACAAACUUCUAACUAAACA^    AA          G          U-     AACUAU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11624-P3_5p
mirBase accessionMIMAT0045528
Sequence 
0- AUUGAGACUUUAGCAUUUUCAUG -23
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Star sequence

Tca-Mir-11624-P3_3p*
mirBase accessionMIMAT0045529
Sequence 
38- UGAUGUGCUAAAGUGUCGGUUU -60
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