| MirGeneDB ID | Tur-Mir-87-o38 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
|
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| Paralogues |
Tur-Mir-87-o39
Tur-Mir-87-o40
Tur-Mir-87-o41
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587301.1: 4415425-4415497 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUCGGCAAGUGUCAUCAUUGCGUUGAACGUGCCCGAUACUUUGUCUCAACCUGAGAGUUUUAAUCUUGCAAAUGAAAAAGGUGAGCAAAGUUUCAGGUGUGUUUGGUGUAAUUUGCAACUUCAUUGGGUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACUCGGCAAGUGUCAUC---| UU UG C U U A GAGAGUUUUAAU
AUUGCG GAACG CC GA ACUUUG CUCA CCU C
UAAUGU UUUGU GG CU UGAAAC GAGU GGA U
ACGUGGGUUACUUCAACGUU^ GG GU A U - - AAAAGUAAACGU
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Tur-Mir-87-o38_5p* |
| mirBase accession | None |
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| Sequence |
0- UGCCCGAUACUUUGUCUCAACCUG -24
Get sequence
|
|---|
| Mature sequence |
Tur-Mir-87-o38_3p |
| mirBase accession | None |
|---|
| Sequence |
51- GUGAGCAAAGUUUCAGGUGUGU -73
Get sequence
|
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