MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-87-o41

Family name MIR-87 (all species)
Seed UGAGCAA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-87-o38  Tur-Mir-87-o39  Tur-Mir-87-o40 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) T. urticae
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587301.1: 4414906-4414965 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUUCUUAUUGAAACGUUACGUUGAACGUGCCUCUGACUUUGUCUCAGCCUCAGACAUGAUUAAGGUGAGCAAAGUUUCAGGUGUGUUUGGUGUAACUGGAUAAACAGCCUUAAAUU
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Structure
        10          20        30        40        50        60
UUUUUUUCUUAUUGAAAC--|     UU     UG   CU       U    G   CAGAC 
                    GUUACG  GAACG  CCU  GACUUUG CUCA CCU     A
                    CAAUGU  UUUGU  GGA  UUGAAAC GAGU GGA     U
UUAAAUUCCGACAAAUAGGU^     GG     GU   CU       -    -   AUUAG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Tur-Mir-87-o41_5p*

mirBase accessionNone
Sequence
0- GUGCCUCUGACUUUGUCUCAGCCU -24
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Mature sequence

Tur-Mir-87-o41_3p

mirBase accessionNone
Sequence
38- GUGAGCAAAGUUUCAGGUGUGU -60
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