| MirGeneDB ID | Tur-Mir-87-o40 |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
|
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| Paralogues |
Tur-Mir-87-o38
Tur-Mir-87-o39
Tur-Mir-87-o41
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587301.1: 4415090-4415158 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CAUUCUUUCAAUUUUAAAUGGUCAUCAUACCCGCCUGAACUAUUGUCUCUCUGUACCUCUGUAGGUUUAUUAUGAAGGUGAGCAAAGUUUCAGGUGUGCUUGAACCAUUUAUACCAGCAUCAUUUGAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUUCUUUCAAUUUUAA----| CA UACC - A U - GUACCUCUGUA
AUGGU UCA CGCCUGAA CU UUG CUC UCU \
UACCA AGU GUGGACUU GA AAC GAG GGA G
GGAGUUUACUACGACCAUAUU^ -- UCGU U - - U AGUAUUAUUUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Tur-Mir-87-o40_5p* |
| mirBase accession | None |
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| Sequence |
0- CCGCCUGAACUAUUGUCUCUCUGUACC -27
Get sequence
|
|---|
| Mature sequence |
Tur-Mir-87-o40_3p |
| mirBase accession | None |
|---|
| Sequence |
47- GUGAGCAAAGUUUCAGGUGUGC -69
Get sequence
|
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