| MirGeneDB ID | Tur-Mir-87-o39 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Seed |
AGCCGGA |
|---|
| Species |
Two-spotted spider mite (Tetranychus urticae) |
|---|
| MiRBase ID |
tur-mir-87
|
|---|
| Paralogues |
Tur-Mir-87-o38
Tur-Mir-87-o40
Tur-Mir-87-o41
|
|---|
| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
T. urticae
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587301.1: 4415225-4415289 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGACAACUUCAAUUGUGCAUUUUGUUGAACAAGCCGGAACCUUUGACUCAACCUUAUGAAGUAUUCAAUUUAGUUGAGCAAAGUUUCAGGUGUGUCCAAUGAAACGUCCACUCAUCAAUUGGAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGACAACUUCAAUUGUGCA--| UG A A G C A CUUAUGAAG
UUU UUG ACA GCC GAA CUUUG CUCAAC U
AAA AAC UGU UGG CUU GAAAC GAGUUG A
UAAGGUUAACUACUCACCUGC^ GU C G A U - AUUUAACUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Tur-Mir-87-o39_5p |
| mirBase accession | MIMAT0023066 |
|---|
| Sequence |
0- AAGCCGGAACCUUUGACUCAACC -23
Get sequence
|
|---|
| Co-mature sequence |
Tur-Mir-87-o39_3p |
| mirBase accession | MIMAT0023067 |
|---|
| Sequence |
43- UUGAGCAAAGUUUCAGGUGUGU -65
Get sequence
|
|---|
