| MirGeneDB ID | Xla-Mir-192-P2d |
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| Family name |
MIR-192 (all species) |
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| Seed |
UGACCUA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-192-P1a
Xla-Mir-192-P1b
Xla-Mir-192-P2c
|
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| Orthologues |
Ami-Mir-192-P2
Bta-Mir-192-P2
Cfa-Mir-192-P2
Cpi-Mir-192-P2
Cpo-Mir-192-P2
Dno-Mir-192-P2
Ete-Mir-192-P2
Gja-Mir-192-P2
Hsa-Mir-192-P2
Loc-Mir-192-P2
Mml-Mir-192-P2
Mmu-Mir-192-P2
Mun-Mir-192-P2
Oan-Mir-192-P2
Ocu-Mir-192-P2
Rno-Mir-192-P2
Sha-Mir-192-P2
Spt-Mir-192-P2
Xtr-Mir-192-P2
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030731.1: 2843983-2844043 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAAACAGAGAGGAAGCGAGUGUACGGGCCUAUGACCUAUGAAUUGACAGCUAGUGGAUGUACAGUCUGACUGUCAGUUCUGUAGGGCACAGGUUCGUCCACCUUAUUGCUAUACACAUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAACAGAGAGGAAGCGA-- U A A -| C GUGGAU
GUG ACGGGCCU UG CCUAU GAAUUGACAG UA G
CAC UGCUUGGA AC GGAUG CUUGACUGUC GU U
AAAUACACAUAUCGUUAUUC C C G U^ A CUGACA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-192-P2d_5p |
| mirBase accession | None |
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| Sequence |
0- AUGACCUAUGAAUUGACAGCUA -22
Get sequence
|
|---|
| Star sequence |
Xla-Mir-192-P2d_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- ACUGUCAGUUCUGUAGGGCACAG -61
Get sequence
|
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