MirGeneDB ID | Ocu-Mir-192-P2 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
Ocu-Mir-192-P1
|
Orthologues |
Ami-Mir-192-P2
Bta-Mir-192-P2
Cfa-Mir-192-P2
Cpi-Mir-192-P2
Cpo-Mir-192-P2
Dno-Mir-192-P2
Dre-Mir-192-P2b
Ete-Mir-192-P2
Gja-Mir-192-P2
Gmo-Mir-192-P2b
Hsa-Mir-192-P2
Loc-Mir-192-P2
Mal-Mir-192-P2b
Mml-Mir-192-P2
Mmu-Mir-192-P2
Mun-Mir-192-P2
Oan-Mir-192-P2
Rno-Mir-192-P2
Sha-Mir-192-P2
Spt-Mir-192-P2
Tni-Mir-192-P2b-v1
Tni-Mir-192-P2b-v2
Xla-Mir-192-P2c
Xla-Mir-192-P2d
Xtr-Mir-192-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (oryCun2_add) |
Ocu-Mir-192-P1_pre_CM023772.1:234556056-234556193: 38-101 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGGAUCGCCGAGACCGAGUGCACAGGGCUCUGACCUAUGAAUUGACAGCCAGUGCUCCGUCUCCCCUCUGGCUGCCAAUUCCAUAGGUCACAGGUAUGUUCGCCUCAAUGCCGGCCGCCAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGGAUCGCCGAGACCGA-- C GG C- -| A AGUGCUCCG
GUG ACA GCU UGACCUAU GAAUUG CAGCC \
CGC UGU UGG ACUGGAUA CUUAAC GUCGG U
ACGACCGCCGGCCGUAACUC U A- AC C^ C UCUCCCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-192-P2_5p |
mirBase accession | None |
Sequence |
0- CUGACCUAUGAAUUGACAGCC -21
Get sequence
|
Star sequence |
Ocu-Mir-192-P2_3p* |
mirBase accession | None |
Sequence |
42- CUGCCAAUUCCAUAGGUCACAG -64
Get sequence
|