MirGeneDB ID | Laf-Mir-192-P2 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-192-P1
|
Orthologues |
Aca-Mir-192-P2
Ami-Mir-192-P2
Bta-Mir-192-P2
Cfa-Mir-192-P2
Cja-Mir-192-P2
Cli-Mir-192-P2
Cmi-Mir-192-P2
Cpi-Mir-192-P2
Cpo-Mir-192-P2
Dno-Mir-192-P2
Eca-Mir-192-P2
Ete-Mir-192-P2
Gga-Mir-192-P2
Gja-Mir-192-P2
Hsa-Mir-192-P2
Lch-Mir-192-P2
Mdo-Mir-192-P2
Mml-Mir-192-P2
Mmr-Mir-192-P2
Mmu-Mir-192-P2
Mun-Mir-192-P2
Oan-Mir-192-P2
Oan-Mir-192-P2-as
Ocu-Mir-192-P2
Pab-Mir-192-P2
Pbv-Mir-192-P2
Rno-Mir-192-P2
Spt-Mir-192-P2
Sto-Mir-192-P2
Tgu-Mir-192-P2
Xla-Mir-192-P2a
Xla-Mir-192-P2b
Xtr-Mir-192-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010098.1: 4591092-4591156 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGGGCUGCCAAGACCGAGUGCACAGGGCUCUGACCUAUGAAUUGACAGCCAGUGCCCUCGGCUCCCCUCUGGCUGCCAAUUCCAUAGGUCACAGGUAUGUUCGCCUCAAUUCCAGCAGCCAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCGGGCUGCCAAGACCGA-- C GG C- -| A AGUGCCCUC
GUG ACA GCU UGACCUAU GAAUUG CAGCC G
CGC UGU UGG ACUGGAUA CUUAAC GUCGG G
AGGACCGACGACCUUAACUC U A- AC C^ C UCUCCCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Laf-Mir-192-P2_5p |
mirBase accession | None |
Sequence |
0- CUGACCUAUGAAUUGACAGCC -21
Get sequence
|
Star sequence |
Laf-Mir-192-P2_3p* |
mirBase accession | None |
Sequence |
43- CUGCCAAUUCCAUAGGUCACAG -65
Get sequence
|