MirGeneDB ID | Ete-Mir-192-P2 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-192-P4
|
Orthologues |
Aca-Mir-192-P2
Ami-Mir-192-P2
Bta-Mir-192-P2
Cfa-Mir-192-P2
Cja-Mir-192-P2
Cli-Mir-192-P2
Cmi-Mir-192-P2
Cpi-Mir-192-P2
Cpo-Mir-192-P2
Dno-Mir-192-P2
Eca-Mir-192-P2
Gga-Mir-192-P2
Gja-Mir-192-P2
Hsa-Mir-192-P2
Laf-Mir-192-P2
Lch-Mir-192-P2
Mdo-Mir-192-P2
Mml-Mir-192-P2
Mmr-Mir-192-P2
Mmu-Mir-192-P2
Mun-Mir-192-P2
Oan-Mir-192-P2
Oan-Mir-192-P2-as
Ocu-Mir-192-P2
Pab-Mir-192-P2
Pbv-Mir-192-P2
Rno-Mir-192-P2
Spt-Mir-192-P2
Sto-Mir-192-P2
Tgu-Mir-192-P2
Xla-Mir-192-P2a
Xla-Mir-192-P2b
Xtr-Mir-192-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980299: 49541581-49541640 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCGCAUCAUCAAGAAACAGCGCACAGGAAAAUGACCUAUGAAUUGACAGACAAUAUGGCCAAGCUUGUCUGUCAUUUCUGUAGGCCAAUAUUCUGUAUGUCUCUGCUACUUCAAAAUCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGCAUCAUCAAGAAACA-- C AAA A -| U AUAUGG
GCG ACAGGA UG CCUAU GAA UGACAGACA \
UGU UGUCUU AC GGAUG CUU ACUGUCUGU C
GACUAAAACUUCAUCGUCUC A AUA C U^ U UCGAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-192-P2_5p |
mirBase accession | None |
Sequence |
0- AUGACCUAUGAAUUGACAGACA -22
Get sequence
|
Star sequence |
Ete-Mir-192-P2_3p* |
mirBase accession | None |
Sequence |
37- UCUGUCAUUUCUGUAGGCCAAUA -60
Get sequence
|