MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-1000
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 12965531-12965590 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGACACAGCUUCACCCCCUAGCAGUCGAUGAUAUUGUCCUGUCACAGCAGUACUUUUUGCCUAGUUUACUGUUGUUUCGGGACAUUUCCAUCGACGCUAGGGUUUUCAUCCGACCAUUUC
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Structure
        10           20        30        40        50         
GGACACAGCUUCACCCC---|    A       AUAU       UC         CUUUUU 
                    CUAGC GUCGAUG    UGUCCUG  ACAGCAGUA      G
                    GAUCG CAGCUAC    ACAGGGC  UGUUGUCAU      C
CUUUACCAGCCUACUUUUGG^    -       CUUU       UU         UUGAUC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Mature sequence

Aga-Mir-1000_5p

mirBase accessionMIMAT0010109
Sequence
0- AUAUUGUCCUGUCACAGCAGUA -22
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Star sequence

Aga-Mir-1000_3p* (predicted)

mirBase accessionNone
Sequence
38- CUGUUGUUUCGGGACAUUUCCA -60
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