MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(GpalI1)
Scaffold138: 468598-468663 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGAAUGGAAACGAAACGAUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUGUGAUUUCUUUCAAUAUAUUACUGCUGGGCCGGGGCAUUAACACUGUUGGUCGUUGUAGACAACGUUUAUCAU
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Structure
        10          20        30        40         50        60  
AGAAGAAUGGAAACGAA--      GC  U  A  U      -|  A        UGUGAUUUC 
                   ACGAUU  CA UG UA UGUCCU GUC CAGCAGUA         U
                   UGCUGG  GU AC AU ACGGGG CGG GUCGUCAU         U
UACUAUUUGCAACAGAUGU      UU  C  A  U      C^  -        UAUAUAACU 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Gpa-Mir-1000_5p

mirBase accessionNone
Sequence
0- AUAUUGUCCUGUCACAGCAGUA -22
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Star sequence

Gpa-Mir-1000_3p* (predicted)

mirBase accessionNone
Sequence
44- CUGCUGGGCCGGGGCAUUAACA -66
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