MirGeneDB ID | Gpa-Mir-1000 |
Family name |
MIR-1000 (all species) |
Seed |
UAUUGUC |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Aga-Mir-1000
Bge-Mir-1000
Dan-Mir-1000
Dlo-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
|
Node of Origin (locus) |
Neoptera
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Node of Origin (family) |
Neoptera
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Genome context (GpalI1) |
Scaffold138: 468598-468663 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGAAGAAUGGAAACGAAACGAUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUGUGAUUUCUUUCAAUAUAUUACUGCUGGGCCGGGGCAUUAACACUGUUGGUCGUUGUAGACAACGUUUAUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAAGAAUGGAAACGAA-- GC U A U -| A UGUGAUUUC
ACGAUU CA UG UA UGUCCU GUC CAGCAGUA U
UGCUGG GU AC AU ACGGGG CGG GUCGUCAU U
UACUAUUUGCAACAGAUGU UU C A U C^ - UAUAUAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Mature sequence |
Gpa-Mir-1000_5p |
mirBase accession | None |
Sequence |
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
|
Star sequence |
Gpa-Mir-1000_3p* (predicted) |
mirBase accession | None |
Sequence |
44- CUGCUGGGCCGGGGCAUUAACA -66
Get sequence
|