| MirGeneDB ID | Gpa-Mir-1000 |
|---|
| Family name |
MIR-1000 (all species) |
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| Seed |
UAUUGUC |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Aga-Mir-1000
Bge-Mir-1000
Dan-Mir-1000
Dlo-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
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| Node of Origin (locus) |
Neoptera
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| Node of Origin (family) |
Neoptera
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Genome context
(GpalI1) |
Scaffold138: 468598-468663 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAAGAAUGGAAACGAAACGAUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUGUGAUUUCUUUCAAUAUAUUACUGCUGGGCCGGGGCAUUAACACUGUUGGUCGUUGUAGACAACGUUUAUCAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAAGAAUGGAAACGAA-- GC U A U -| A UGUGAUUUC
ACGAUU CA UG UA UGUCCU GUC CAGCAGUA U
UGCUGG GU AC AU ACGGGG CGG GUCGUCAU U
UACUAUUUGCAACAGAUGU UU C A U C^ - UAUAUAACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
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| Mature sequence |
Gpa-Mir-1000_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
|
|---|
| Star sequence |
Gpa-Mir-1000_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
44- CUGCUGGGCCGGGGCAUUAACA -66
Get sequence
|
|---|
