MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-1000
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Drosophila_melanogaster_BDGP6)
3R: 25588878-25588944 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUACCAUGAAAUCGGACGCUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUUGUAACACUAUAUUAUAGUUUACUGCUGGGUCGGGGCAUUAACAUUGUUGAGCGUCAUUAGCAACGAGCGGCGG
Get precursor sequence
Structure
        10          20        30        40        50        60   
AUAUACCAUGAAAUCGG--|     GC  U  A  U       UCA        UUGUAACACU 
                   ACGCUU  CA UG UA UGUCCUG   CAGCAGUA          \
                   UGCGAG  GU AC AU ACGGGGC   GUCGUCAU          A
GGCGGCGAGCAACGAUUAC^     UU  U  A  U       UGG        UUGAUAUUAU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-1000_5p

mirBase accessionMIMAT0005520
Sequence
0- AUAUUGUCCUGUCACAGCAGUA -22
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Proposed targets microrna.org: MIMAT0005520
TargetScanFly: dme-miR-1000
Star sequence

Dme-Mir-1000_3p*

mirBase accessionMIMAT0020900
Sequence
45- CUGCUGGGUCGGGGCAUUAACA -67
Get sequence