| MirGeneDB ID | Dlo-Mir-1000 |
|---|
| Family name |
MIR-1000 (all species) |
|---|
| Seed |
UAUUGUC |
|---|
| Species |
Braconid wasp (Diachasmimorpha longicaudata) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Aga-Mir-1000
Bge-Mir-1000
Dan-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Gpa-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
|
|---|
| Node of Origin (locus) |
Neoptera
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(GCF_034640455.1_iyDiaLong2_genomic) |
NC_087230.1: 7316488-7316546 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAACAUCAACUGACGAGUUCGGUGUCUGGAAUAUUGUCCUAUCACAGCAGUACGCCUUAUCAAGUUACUGGUGUGAUGGGACAUUGUCCUGGAUGCUGUGACAUAGCAACGUUAAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAACAUCAACUGACGAGUU--| UG A U G CGCCUU
CGGUGUC G AUA UGUCCUAUCACA CAGUA \
GUCGUAG C UGU ACAGGGUAGUGU GUCAU A
ACAGAAUUGCAACGAUACAGU^ GU C U G UGAACU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dlo-Mir-1000_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUAUUGUCCUAUCACAGCAGUA -22
Get sequence
|
|---|
| Star sequence |
Dlo-Mir-1000_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CUGGUGUGAUGGGACAUUGUCC -59
Get sequence
|
|---|
