MirGeneDB 2.1

MirGeneDB ID

Bge-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Dan-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Bger_2.0)
KZ615968.1: 16799-16859 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCGGUCGACCGGCCGCCGGUGGACUGUGAUAUUGUCCUGUCACAGCAGUACUGAUCACAAGAGCCUACUGCUGUUUCGGGACAUAGCCACAGACCCUGGUAAAAUCGACGACGCAGGGA
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Structure
        10           20        30        40        50          
UAUCGGUCGACCGGCCG---|   U  A     AUAU       UC         CUGAUCA 
                    CCGG GG CUGUG    UGUCCUG  ACAGCAGUA       \
                    GGUC CC GACAC    ACAGGGC  UGUCGUCAU       C
AGGGACGCAGCAGCUAAAAU^   -  A     CGAU       UU         CCGAGAA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Mature sequence

Bge-Mir-1000_5p

mirBase accessionNone
Sequence
0- AUAUUGUCCUGUCACAGCAGUA -22
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Star sequence

Bge-Mir-1000_3p*

mirBase accessionNone
Sequence
39- CUGCUGUUUCGGGACAUAGCCA -61
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