MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-1000
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 3R: 20926899-20926965 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUACCGUGAAAUCGGACGCUUGCCAUUGAUAUUGUCCUGUCACAGCAGUAUUGUUACACUAUAUUAUAGUUUACUGCUGGGUCGGGGCAUUAACAUUGUUGAGCGUCAUUAGCAACGAGCGGCGG
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Structure
        10          20        30        40        50        60   
AUAUACCGUGAAAUCGG--|     GC  U  A  U       UCA        UUGUUACACU 
                   ACGCUU  CA UG UA UGUCCUG   CAGCAGUA          \
                   UGCGAG  GU AC AU ACGGGGC   GUCGUCAU          A
GGCGGCGAGCAACGAUUAC^     UU  U  A  U       UGG        UUGAUAUUAU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-1000_5p
mirBase accessionMIMAT0012457
Sequence 
0- AUAUUGUCCUGUCACAGCAGUA -22
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Star sequence

Dsi-Mir-1000_3p*
mirBase accessionMIMAT0012458
Sequence 
45- CUGCUGGGUCGGGGCAUUAACA -67
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