| MirGeneDB ID | Dan-Mir-1000 |
|---|
| Family name |
MIR-1000 (all species) |
|---|
| Seed |
UAUUGUC |
|---|
| Species |
Fruit fly (Drosophila ananassae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Aga-Mir-1000
Bge-Mir-1000
Dlo-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Gpa-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
|
|---|
| Node of Origin (locus) |
Neoptera
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(Dana_caf1) |
scaffold_13340: 3670443-3670511 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAUAUGGUGUCAUAUAGACGCUUGCCGAUGAUAUUGUCCUGUCACAGCAGUAUUGUAAUUCUAUACUAUAUAGCUUACUGCUGGGUCGGGGCAUUAACAUUGUUGAGCGUCAUUAGCAACGAGGAGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAUAUGGUGUCAUAUAG--| GC A U UCA UUGUAAUUCUA
ACGCUU CGAUG UA UGUCCUG CAGCAGUA \
UGCGAG GUUAC AU ACGGGGC GUCGUCAU U
AAGGAGGAGCAACGAUUAC^ UU A U UGG UCGAUAUAUCA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dan-Mir-1000_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
|
|---|
| Star sequence |
Dan-Mir-1000_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- CUGCUGGGUCGGGGCAUUAACA -69
Get sequence
|
|---|
