MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-1000
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Hme-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Tcas5.2)		 LG2: 3329648-3329705 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCGAUCCUGCUUGCCACGGCUCGGCCAUGAUAUUGUCCUGUCACAGCAGUACUGGUUCCGAGUUACUGCUGCUUCGGGACAUGACCAUGGCCGGGCCUCUUGGCCGACGCCGCCCCC
Get precursor sequence
Structure
        10          20        30        40        50        
CGCGAUCCUGCUUGCCAC--|           AUAU       UCA        CUGGU 
                    GGCUCGGCCAUG    UGUCCUG   CAGCAGUA     U
                    CCGGGCCGGUAC    ACAGGGC   GUCGUCAU     C
CCCCCGCCGCAGCCGGUUCU^           CAGU       UUC        UGAGC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-1000_5p
mirBase accessionMIMAT0010097
Sequence 
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
Star sequence

Tca-Mir-1000_3p*
mirBase accessionMIMAT0019184
Sequence 
36- CUGCUGCUUCGGGACAUGACCA -58
Get sequence