MirGeneDB 3.0

MirGeneDB ID

Dmo-Mir-1000

Family name MIR-1000 (all species)
Seed UAUUGUC
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Hme-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Dmoj_caf1)
scaffold_6540: 25791565-25791629 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAACGCGUCUAUUAUAGCGCUUGCCAGUGAUAUUGUCCUGUCACAGCAGUAUUGUAAAUUAAGCAAUUGGUACUGCUGAGCCGGGGCAUUAACAUUGUUGAGCGUCGUUAGCAACCAGAAGAAA
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Structure
        10          20        30        40        50        60  
UCAACGCGUCUAUUAUA--|     GC     A  U       UCA        UUGUAAAUU 
                   GCGCUU  CAGUG UA UGUCCUG   CAGCAGUA         \
                   UGCGAG  GUUAC AU ACGGGGC   GUCGUCAU         A
AAAGAAGACCAACGAUUGC^     UU     A  U       CGA        GGUUAACGA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-1000_5p

mirBase accessionNone
Sequence
0- AUAUUGUCCUGUCACAGCAGUA -22
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Star sequence

Dmo-Mir-1000_3p*

mirBase accessionNone
Sequence
43- CUGCUGAGCCGGGGCAUUAACA -65
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