MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-316

Family name MIR-316 (all species)
Seed GUCUUUU
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID
Paralogues
Orthologues Aae-Mir-316  Bge-Mir-316  Dan-Mir-316  Dme-Mir-316  Dmo-Mir-316  Dsi-Mir-316  Dya-Mir-316  Gpa-Mir-316  Hme-Mir-316  Tca-Mir-316 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064602.1: 98412398-98412461 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAUCACCACAUCCGUCUUUCGACCGAUUUGUCUUUUCCUGCUUACUGCCGGUAGCAUUCGAUAUCCUUCGACAGCAAUCAGAAAAAGACGCCUCGGUUGGGAAGCAUCCGGCAACGAUCCGA
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Structure
        10          20        30        40        50        60 
GUAAUCACCACAUCCGUC--|UU       UU        C   C  A   C  GUAGCAUU 
                    U  CGACCGA  UGUCUUUU CUG UU CUG CG        C
                    A  GUUGGCU  GCAGAAAA GAC AA GAC GC        G
AGCCUAGCAACGGCCUACGA^GG       CC        A   U  C   A  UUCCUAUA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Mature sequence

Aga-Mir-316_5p

mirBase accessionNone
Sequence
0- UGUCUUUUCCUGCUUACUGCCG -22
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Star sequence

Aga-Mir-316_3p*

mirBase accessionNone
Sequence
42- ACAGCAAUCAGAAAAAGACGCC -64
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