| MirGeneDB ID | Dmo-Mir-316 |
|---|
| Family name |
MIR-316 (all species) |
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| Seed |
GUCUUUU |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
dmo-mir-316
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-316
Aga-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dsi-Mir-316
Dya-Mir-316
Gpa-Mir-316
Hme-Mir-316
Tca-Mir-316
|
|---|
| Node of Origin (locus) |
Pancrustacea
|
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| Node of Origin (family) |
Pancrustacea
|
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Genome context
(Dmoj_caf1) |
scaffold_6680: 18891224-18891282 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUCGAUUUUUAUAUAAAGUUCUAGUCGAUUUGUCUUUUUCCGCUUACUGACGUUUUAUUGAACAACGGCAGGGAAGGGAAAAAGGCGUAUUUACUAUGAAUUAUUUCAACGAUAUAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCGAUUUUUAUAUAAA- -| C U G A- A UUUUAU
GUUC UAGU GAU UGUCUUUUUCC CUU CUG CG \
UAAG AUCA UUA GCGGAAAAAGG GAA GAC GC U
AAAAUAUAGCAACUUUAU U^ U U - GG G AACAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dmo-Mir-316_5p |
| mirBase accession | MIMAT0008627 |
|---|
| Sequence |
0- UGUCUUUUUCCGCUUACUGACG -22
Get sequence
|
|---|
| Star sequence |
Dmo-Mir-316_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GCAGGGAAGGGAAAAAGGCGUA -59
Get sequence
|
|---|
