| MirGeneDB ID | Tca-Mir-316 |
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| Family name |
MIR-316 (all species) |
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| Seed |
GUCUUUU |
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| Species |
Red flour beetle (Tribolium castaneum) |
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| MiRBase ID |
tca-mir-316
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| Paralogues |
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| Orthologues |
Aae-Mir-316
Aga-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dmo-Mir-316
Dsi-Mir-316
Dya-Mir-316
Gpa-Mir-316
Hme-Mir-316
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| Node of Origin (locus) |
Pancrustacea
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| Node of Origin (family) |
Pancrustacea
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Genome context
(Tcas5.2) |
LG3: 998672-998731 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUUAAUUAUCAUCGCCACACUUGUGAACGUGUCUUUUUCCGCUUUGCUGCCGCUGUUCUGUCGUCGCCAGCAGAGAGGAUGAGGCUAGUGCACGAGUUGACCUCACAGCGAAGCCCGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUAAUUAUCAUCGCCAC---| A GU UU G C CUGUU
ACUUGUG AC GUCUU UCC CUUUGCUG CG C
UGAGCAC UG CGGAG AGG GAGACGAC GC U
CGGCCCGAAGCGACACUCCAGU^ G AU U- A C UGCUG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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| Mature sequence |
Tca-Mir-316_5p |
| mirBase accession | MIMAT0018716 |
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| Sequence |
0- UGUCUUUUUCCGCUUUGCUGCCG -23
Get sequence
|
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| Star sequence |
Tca-Mir-316_3p* |
| mirBase accession | MIMAT0018717 |
|---|
| Sequence |
37- CCAGCAGAGAGGAUGAGGCUAGU -60
Get sequence
|
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