MirGeneDB ID | Gpa-Mir-316 |
Family name |
MIR-316 (all species) |
Seed |
GUCUUUU |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-316
Aga-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dmo-Mir-316
Dsi-Mir-316
Dya-Mir-316
Hme-Mir-316
Tca-Mir-316
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Node of Origin (locus) |
Pancrustacea
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Node of Origin (family) |
Pancrustacea
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Genome context (GpalI1) |
Scaffold164: 76840-76898 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACGGCAAUGAUCGUUAAGUUCUAGUUGAUUUGUCUUUUUCCGCUUACUGCCGCUUAAUUUUGCGUCGACAGGAGAGGGAAAAAGACGUAUAAACUGGAAACUUUUUCAACGAUGUGAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGGCAAUGAUCGUUAAG--| GAUU G A- C CUUAAU
UUCUAGUU UGUCUUUUUCC CUU CUG CG \
AAGGUCAA GCAGAAAAAGG GAG GAC GC U
UAAGUGUAGCAACUUUUUCA^ AUAU - AG A UGCGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Gpa-Mir-316_5p |
mirBase accession | None |
Sequence |
0- UGUCUUUUUCCGCUUACUGCCG -22
Get sequence
|
Star sequence |
Gpa-Mir-316_3p* |
mirBase accession | None |
Sequence |
37- ACAGGAGAGGGAAAAAGACGUA -59
Get sequence
|