MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-316

Family name MIR-316 (all species)
Seed GUCUUUU
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-316  Aga-Mir-316  Bge-Mir-316  Dan-Mir-316  Dme-Mir-316  Dmo-Mir-316  Dsi-Mir-316  Dya-Mir-316  Hme-Mir-316  Tca-Mir-316 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(GpalI1)
Scaffold164: 76840-76898 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGCAAUGAUCGUUAAGUUCUAGUUGAUUUGUCUUUUUCCGCUUACUGCCGCUUAAUUUUGCGUCGACAGGAGAGGGAAAAAGACGUAUAAACUGGAAACUUUUUCAACGAUGUGAAU
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Structure
        10          20        30        40         50         
ACGGCAAUGAUCGUUAAG--|       GAUU           G   A-   C  CUUAAU 
                    UUCUAGUU    UGUCUUUUUCC CUU  CUG CG      \
                    AAGGUCAA    GCAGAAAAAGG GAG  GAC GC      U
UAAGUGUAGCAACUUUUUCA^       AUAU           -   AG   A  UGCGUU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Gpa-Mir-316_5p

mirBase accessionNone
Sequence
0- UGUCUUUUUCCGCUUACUGCCG -22
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Star sequence

Gpa-Mir-316_3p*

mirBase accessionNone
Sequence
37- ACAGGAGAGGGAAAAAGACGUA -59
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