MirGeneDB ID | Bta-Mir-28 |
---|---|
Family name | MIR-28 (all species) |
Seed | ACUAGAU |
Species | Cow (Bos taurus) |
MiRBase ID | bta-mir-28 |
Paralogues | |
Orthologues | Cfa-Mir-28 Cja-Mir-28 Cpo-Mir-28 Dno-Mir-28 Eca-Mir-28 Ete-Mir-28 Hsa-Mir-28 Laf-Mir-28 Mml-Mir-28 Mmr-Mir-28 Mmu-Mir-28 Ocu-Mir-28 Pab-Mir-28 Rno-Mir-28 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037328.1: 78661469-78661530 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAAGAAAGAUAAAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUUUCUGACUUUCCCACUAGAUUGAGAGCUCCUGGAGGGCAGGCACUUUUGUUCAACUGGAAAAAAGet precursor sequence |
Structure | 10 20 30 40 50 60 CAAGAAAGAUAAAAAAU--| C A A U AGUUGCCUU GGU CUUGCCCUC AGGAGCUC CAGUCUA UG U UCA GGACGGGAG UCCUCGAG GUUAGAU AC C AAAAAAGGUCAACUUGUUU^ C G A C CCUUUCAGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Bta-Mir-28_5p* |
mirBase accession | MIMAT0009272 |
Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-28 |
Mature sequence | Bta-Mir-28_3p |
mirBase accession | None |
Sequence |
40- CACUAGAUUGAGAGCUCCUGGA -62
Get sequence
|