MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-28

Family name MIR-28 (all species)
Seed ACUAGAU
Species Cow (Bos taurus)
MiRBase ID bta-mir-28
Paralogues
Orthologues Cfa-Mir-28  Cja-Mir-28  Cpo-Mir-28  Dno-Mir-28  Eca-Mir-28  Ete-Mir-28  Hsa-Mir-28  Laf-Mir-28  Mml-Mir-28  Mmr-Mir-28  Mmu-Mir-28  Ocu-Mir-28  Pab-Mir-28  Rno-Mir-28 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037328.1: 78661469-78661530 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGAAAGAUAAAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUUUCUGACUUUCCCACUAGAUUGAGAGCUCCUGGAGGGCAGGCACUUUUGUUCAACUGGAAAAAA
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Structure
        10          20        30        40        50        60
CAAGAAAGAUAAAAAAU--|  C         A        A       U  AGUUGCCUU 
                   GGU CUUGCCCUC AGGAGCUC CAGUCUA UG         U
                   UCA GGACGGGAG UCCUCGAG GUUAGAU AC         C
AAAAAAGGUCAACUUGUUU^  C         G        A       C  CCUUUCAGU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-28_5p*

mirBase accessionMIMAT0009272
Sequence
0- AAGGAGCUCACAGUCUAUUGAG -22
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Proposed targets TargetScanVert: bta-miR-28
Mature sequence

Bta-Mir-28_3p

mirBase accessionNone
Sequence
40- CACUAGAUUGAGAGCUCCUGGA -62
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