MirGeneDB ID | Laf-Mir-28 |
---|---|
Family name | MIR-28 (all species) |
Seed | AGGAGCU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-28 Cfa-Mir-28 Cja-Mir-28 Cpo-Mir-28 Dno-Mir-28 Eca-Mir-28 Ete-Mir-28 Hsa-Mir-28 Mml-Mir-28 Mmr-Mir-28 Mmu-Mir-28 Ocu-Mir-28 Pab-Mir-28 Rno-Mir-28 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010052.1: 9163845-9163906 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AAGAAUGAAUGAAAAACGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUUUCUGACUUUCCCACUAGAUUGUGAGCUCCUGGAGGGCAGGCACUUUUGUUCAACUGGAAAAAAGet precursor sequence |
Structure | 10 20 30 40 50 60 AAGAAUGAAUGAAAAAC--| C A U AGUUGCCUU GGU CUUGCCCUC AGGAGCUCACAGUCUA UG U UCA GGACGGGAG UCCUCGAGUGUUAGAU AC C AAAAAAGGUCAACUUGUUU^ C G C CCUUUCAGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Laf-Mir-28_5p |
mirBase accession | None |
Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
Co-mature sequence | Laf-Mir-28_3p |
mirBase accession | None |
Sequence |
40- CACUAGAUUGUGAGCUCCUGGA -62
Get sequence
|