MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-28

Family name MIR-28 (all species)
Seed AGGAGCU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-28  Cfa-Mir-28  Cpo-Mir-28  Dno-Mir-28  Eca-Mir-28  Ete-Mir-28  Hsa-Mir-28  Laf-Mir-28  Mml-Mir-28  Mmr-Mir-28  Mmu-Mir-28  Ocu-Mir-28  Pab-Mir-28  Rno-Mir-28 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021929.1: 11419124-11419185 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAACAAAUUAAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUCUCUAACUUUCCCACUAGAUUGUAAGCUCCUGGAGGGCAGGCACUUUUGUUCAUCUGGAAAAAG
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Structure
        10          20        30        40        50        60
AAGAACAAAUUAAAAAU--|  C         A       C        U  AGUUGCCUC 
                   GGU CUUGCCCUC AGGAGCU ACAGUCUA UG         U
                   UCA GGACGGGAG UCCUCGA UGUUAGAU AC         C
GAAAAAGGUCUACUUGUUU^  C         G       A        C  CCUUUCAAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-28_5p
mirBase accessionNone
Sequence 
0- AAGGAGCUCACAGUCUAUUGAG -22
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Co-mature sequence

Cja-Mir-28_3p
mirBase accessionNone
Sequence 
40- CACUAGAUUGUAAGCUCCUGGA -62
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