| MirGeneDB ID | Cja-Mir-28 |
|---|---|
| Family name | MIR-28 (all species) |
| Seed | AGGAGCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-28 Cfa-Mir-28 Cpo-Mir-28 Dno-Mir-28 Eca-Mir-28 Ete-Mir-28 Hsa-Mir-28 Laf-Mir-28 Mml-Mir-28 Mmr-Mir-28 Mmu-Mir-28 Ocu-Mir-28 Pab-Mir-28 Rno-Mir-28 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021929.1: 11419124-11419185 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGAACAAAUUAAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUGCCUCUCUAACUUUCCCACUAGAUUGUAAGCUCCUGGAGGGCAGGCACUUUUGUUCAUCUGGAAAAAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGAACAAAUUAAAAAU--| C A C U AGUUGCCUC GGU CUUGCCCUC AGGAGCU ACAGUCUA UG U UCA GGACGGGAG UCCUCGA UGUUAGAU AC C GAAAAAGGUCUACUUGUUU^ C G A C CCUUUCAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-28_5p |
| mirBase accession | None |
| Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
| Co-mature sequence | Cja-Mir-28_3p |
| mirBase accession | None |
| Sequence |
40- CACUAGAUUGUAAGCUCCUGGA -62
Get sequence
|
