MirGeneDB ID | Ocu-Mir-28 |
Family name |
MIR-28 (all species) |
Seed |
ACUAGAU |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-28
|
Paralogues |
|
Orthologues |
Bta-Mir-28
Cfa-Mir-28
Cja-Mir-28
Cpo-Mir-28
Dno-Mir-28
Eca-Mir-28
Ete-Mir-28
Hsa-Mir-28
Laf-Mir-28
Mml-Mir-28
Mmr-Mir-28
Mmu-Mir-28
Pab-Mir-28
Rno-Mir-28
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr14: 84299170-84299231 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAAGAAUAAAAAAUUGGUCCUUGCCCCCAAGGAGCUCACAGUCUAUUGAGUUGCCAUUCUGACUUCCCCACUAGAUUAUGAGCUCCUGGAGGGCAGGCACUUUUAUUCAUCUGAAAUAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAAAGAAUAAAAAAUU-- C -| A C U AGUUGCCAU
GGU CUUGCCC CCA GGAGCUCA AGUCUA UG U
UCA GGACGGG GGU CCUCGAGU UUAGAU AC C
AGAUAAAGUCUACUUAUUU C A^ - A C CCCUUCAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-28_5p* |
mirBase accession | MIMAT0048141 |
Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
Mature sequence |
Ocu-Mir-28_3p |
mirBase accession | MIMAT0048142 |
Sequence |
40- CACUAGAUUAUGAGCUCCUGGA -62
Get sequence
|