| MirGeneDB ID | Pab-Mir-28 |
|---|---|
| Family name | MIR-28 (all species) |
| Seed | AGGAGCU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-28 Cfa-Mir-28 Cja-Mir-28 Cpo-Mir-28 Dno-Mir-28 Eca-Mir-28 Ete-Mir-28 Hsa-Mir-28 Laf-Mir-28 Mml-Mir-28 Mmr-Mir-28 Mmu-Mir-28 Ocu-Mir-28 Rno-Mir-28 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 198684265-198684326 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGAAAAAAUUUAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUACCUUUCUGAUUUUCCCACUAGAUUGUGAGCUCCUGGAGGGCAGGCACUUUUGUUCAUCUGAAAAAGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGAAAAAAUUUAAAAU--| C A U AGUUACCUU GGU CUUGCCCUC AGGAGCUCACAGUCUA UG U UCA GGACGGGAG UCCUCGAGUGUUAGAU AC C AGAAAAAGUCUACUUGUUU^ C G C CCUUUUAGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-28_5p |
| mirBase accession | None |
| Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
| Co-mature sequence | Pab-Mir-28_3p |
| mirBase accession | None |
| Sequence |
40- CACUAGAUUGUGAGCUCCUGGA -62
Get sequence
|
