| MirGeneDB ID | Pab-Mir-28 |
|---|
| Family name |
MIR-28 (all species) |
|---|
| Seed |
AGGAGCU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-28
Cfa-Mir-28
Cja-Mir-28
Cpo-Mir-28
Dno-Mir-28
Eca-Mir-28
Ete-Mir-28
Hsa-Mir-28
Laf-Mir-28
Mml-Mir-28
Mmr-Mir-28
Mmu-Mir-28
Ocu-Mir-28
Rno-Mir-28
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 198684265-198684326 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAGAAAAAAUUUAAAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUACCUUUCUGAUUUUCCCACUAGAUUGUGAGCUCCUGGAGGGCAGGCACUUUUGUUCAUCUGAAAAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAAAAAAUUUAAAAU--| C A U AGUUACCUU
GGU CUUGCCCUC AGGAGCUCACAGUCUA UG U
UCA GGACGGGAG UCCUCGAGUGUUAGAU AC C
AGAAAAAGUCUACUUGUUU^ C G C CCUUUUAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Pab-Mir-28_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
|---|
| Co-mature sequence |
Pab-Mir-28_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CACUAGAUUGUGAGCUCCUGGA -62
Get sequence
|
|---|
