MirGeneDB ID | Bta-Mir-488 |
Family name |
MIR-488 (all species) |
Seed |
UGAAAGG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-488
|
Paralogues |
|
Orthologues |
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Eca-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Pab-Mir-488
Rno-Mir-488
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037343.1: 58247524-58247582 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGCGUGGAAGACUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAGGUUUCCAGGUUGUUUGAAAGGCUGUUUCUUGGUCAGAAGACUCUCAAUUCCUUCUGGAAGCCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGCGUGGAAGACUUCA--| A A CU C U A C AGGUUU
GAGA UC UCU CC AGA AAUGGC CU UCAAAC \
CUCU AG AGA GG UCU UUGUCG GA AGUUUG C
CUCCGAAGGUCUUCCUUAA^ C A CU U - - A UUGGAC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Bta-Mir-488_5p* |
mirBase accession | None |
Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
Mature sequence |
Bta-Mir-488_3p |
mirBase accession | MIMAT0009330 |
Sequence |
38- UUGAAAGGCUGUUUCUUGGUC -59
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-488
|