MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-488

Family name MIR-488 (all species)
Seed UGAAAGG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-488
Paralogues
Orthologues Bta-Mir-488  Cfa-Mir-488  Cja-Mir-488  Dno-Mir-488  Eca-Mir-488  Ete-Mir-488  Hsa-Mir-488  Laf-Mir-488  Mml-Mir-488  Mmr-Mir-488  Mmu-Mir-488  Pab-Mir-488  Rno-Mir-488 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr13: 4108648-4108705 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAUAGUGGAGAACCUCAGGGAUCAUCUCUCCCAGAUAAUGGCACCCUCAAACCAGUGUCCAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAAGACUCUCAAUUUCUUCUGGAAGCCUC
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Structure
        10         20         30        40        50         
CUAUAGUGGAGAACCUCA-    -| A   CU  C   U      ACCC      CAGUG 
                   GGGA UC UCU  CC AGA AAUGGC    UCAAAC     U
                   CUCU AG AGA  GG UCU UUAUCG    AGUUUG     C
CUCCGAAGGUCUUCUUUAA    C^ A   CU  U   -      GAA-      UUGAC 
      110       100        90         80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-488_5p* (predicted)

mirBase accessionMIMAT0048475
Sequence
0- CCCAGAUAAUGGCACCCUCAAAC -23
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Mature sequence

Ocu-Mir-488_3p

mirBase accessionMIMAT0048476
Sequence
37- UUGAAAGGCUAUUUCUUGGUC -58
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