MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-488

Family name MIR-488 (all species)
Seed UGAAAGG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-488
Paralogues
Orthologues Bta-Mir-488  Cfa-Mir-488  Dno-Mir-488  Ete-Mir-488  Hsa-Mir-488  Mml-Mir-488  Mmu-Mir-488  Ocu-Mir-488 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr13: 76198603-76198661 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCGUUCGGUAAGAGUGAGAAUCCUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCUACAUUGUUUGAAAGGCUGUUUCUUGGUCAGAAGACUCUCAAUUUCUUCUGGAACACUC
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Structure
        10          20        30        40        50          
GUUCGUUCGGUAAGAGU--|   A  C   CU  C   U      A  C      AAGUUU 
                   GAGA UC UCU  CC AGA AAUGGC CU UCAAAC      \
                   CUCU AG AGA  GG UCU UUGUCG GA AGUUUG      C
CUCACAAGGUCUUCUUUAA^   C  A   CU  U   -      -  A      UUACAU 
       110       100        90         80         70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-488_5p*
mirBase accessionMIMAT0017320
Sequence 
0- CCCAGAUAAUGGCACUCUCAAAC -23
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Proposed targets TargetScanVert: rno-miR-488-5p
miRDB: MIMAT0017320
Mature sequence

Rno-Mir-488_3p
mirBase accessionMIMAT0005341
Sequence 
38- UUGAAAGGCUGUUUCUUGGUC -59
Get sequence
Proposed targets microrna.org: MIMAT0005341
TargetScanVert: rno-miR-488-3p
miRDB: MIMAT0005341