MirGeneDB ID | Pab-Mir-488 |
Family name |
MIR-488 (all species) |
Seed |
UGAAAGG |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-488
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Eca-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Rno-Mir-488
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 72923020-72923078 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGAGUGGAAAAUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAUGACUCUCAAUUUCUUCUGGAAGACUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAGAGUGGAAAAUUUCA--| A CU C U A C AAGUUU
GAGA UCAUCU CC AGA AAUGGC CU UCAAAC \
CUCU AGUAGA GG UCU UUAUCG GA AGUUUG C
CUCAGAAGGUCUUCUUUAA^ C CU U - - A UUGAAC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pab-Mir-488_5p* |
mirBase accession | None |
Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
Mature sequence |
Pab-Mir-488_3p |
mirBase accession | None |
Sequence |
38- UUGAAAGGCUAUUUCUUGGUC -59
Get sequence
|