| MirGeneDB ID | Eca-Mir-488 |
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| Family name |
MIR-488 (all species) |
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| Seed |
UGAAAGG |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-488
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| Paralogues |
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| Orthologues |
Bta-Mir-488
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Pab-Mir-488
Rno-Mir-488
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009152.1: 12186558-12186616 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGAGUGGGAGCUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAAGACUCUCCAUUCCUUCUGGAAGCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAGAGUGGGAGCUUUCA--| A A CU C U A C AAGUUU
GAGA UC UCU CC AGA AAUGGC CU UCAAAC \
CUCU AG AGA GG UCU UUAUCG GA AGUUUG C
CUCCGAAGGUCUUCCUUAC^ C A CU U - - A UUGAAC
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Star sequence |
Eca-Mir-488_5p* |
| mirBase accession | None |
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| Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
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| Mature sequence |
Eca-Mir-488_3p |
| mirBase accession | MIMAT0012965 |
|---|
| Sequence |
38- UUGAAAGGCUAUUUCUUGGUC -59
Get sequence
|
|---|
