| MirGeneDB ID | Eca-Mir-488 |
|---|
| Family name |
MIR-488 (all species) |
|---|
| Seed |
UGAAAGG |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-488
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-488
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Pab-Mir-488
Rno-Mir-488
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009152.1: 12186558-12186616 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAGAGUGGGAGCUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAAGACUCUCCAUUCCUUCUGGAAGCCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGAGUGGGAGCUUUCA--| A A CU C U A C AAGUUU
GAGA UC UCU CC AGA AAUGGC CU UCAAAC \
CUCU AG AGA GG UCU UUAUCG GA AGUUUG C
CUCCGAAGGUCUUCCUUAC^ C A CU U - - A UUGAAC
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Eca-Mir-488_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
|---|
| Mature sequence |
Eca-Mir-488_3p |
| mirBase accession | MIMAT0012965 |
|---|
| Sequence |
38- UUGAAAGGCUAUUUCUUGGUC -59
Get sequence
|
|---|
