MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-488

Family name MIR-488 (all species)
Seed UGAAAGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-488  Cfa-Mir-488  Dno-Mir-488  Eca-Mir-488  Ete-Mir-488  Hsa-Mir-488  Laf-Mir-488  Mml-Mir-488  Mmr-Mir-488  Mmu-Mir-488  Ocu-Mir-488  Pab-Mir-488  Rno-Mir-488 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021932.1: 19740595-19740653 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAGUGGAAAAUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAUGACUCUCAAUUCCUUCUGGAAACCUC
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Structure
        10          20        30        40        50          
UAGAGUGGAAAAUUUCA--|   A      CU  C   U      A  C      AAGUUU 
                   GAGA UCAUCU  CC AGA AAUGGC CU UCAAAC      \
                   CUCU AGUAGA  GG UCU UUAUCG GA AGUUUG      C
CUCCAAAGGUCUUCCUUAA^   C      CU  U   -      -  A      UUGAAC 
       110       100        90         80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-488_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCCAGAUAAUGGCACUCUCAAAC -23
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Mature sequence

Cja-Mir-488_3p (predicted)
mirBase accessionNone
Sequence 
38- UUGAAAGGCUAUUUCUUGGUC -59
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