| MirGeneDB ID | Cja-Mir-488 |
|---|---|
| Family name | MIR-488 (all species) |
| Seed | UGAAAGG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-488 Cfa-Mir-488 Dno-Mir-488 Eca-Mir-488 Ete-Mir-488 Hsa-Mir-488 Laf-Mir-488 Mml-Mir-488 Mmr-Mir-488 Mmu-Mir-488 Ocu-Mir-488 Pab-Mir-488 Rno-Mir-488 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021932.1: 19740595-19740653 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAGAGUGGAAAAUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAUGACUCUCAAUUCCUUCUGGAAACCUCGet precursor sequence |
| Structure | 10 20 30 40 50 UAGAGUGGAAAAUUUCA--| A CU C U A C AAGUUU GAGA UCAUCU CC AGA AAUGGC CU UCAAAC \ CUCU AGUAGA GG UCU UUAUCG GA AGUUUG C CUCCAAAGGUCUUCCUUAA^ C CU U - - A UUGAAC 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-488_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
| Mature sequence | Cja-Mir-488_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UUGAAAGGCUAUUUCUUGGUC -59
Get sequence
|
